Yike Shen, Ph.D.

Yike Shen, Ph.D.

Assistant Professor

Publications

Dr. Shen highlighted in bold; Corresponding authors marked*

  1. Shen Y, Kioumourtzoglou MA, Wu H, Spiro A, Vokonas P, Navas-Acien A, Baccarelli AA, Gao F*. (2023). Cohort Network: a knowledge graph towards data dissemination and knowledge-driven discovery for cohort studies. Environmental Science & Technology 57, 8236-8244. Featured as supplemental cover paper. Read ; Code
  2. Prada D, Crandall CJ, Kupsco A, Kioumourtzoglou MA, Stewart JD, Liao D, Yanosky J, Ramirez A, Wactawski-Wende J, Shen Y, Miller G, Ionita-Laza IL, Whitsel EA, Baccarelli AA. (2023). Air pollution and decreased bone mineral density among Women’s Health Initiative participants. eClinicalMedicine 57:101864. Read

  3. Chen Z, Zhang W, Peng A, Shen Y, Jin X, Boyd SA, Teppen BJ, Tiedje JM, Gu C, Zhu D, Luo Y, Li H*. (2023). Bacterial community assembly and antibiotic resistance genes in soils exposed to antibiotics at environmentally relevant concentrations. Environmental Microbiology. Read

    2022

  4. Shen Y*, Laue HE, Shrubsole MJ, Wu H, Bloomquist TR, Larouche A, Zhao K, Gao F, Boivin A, Prada D, Hunting DJ. Gillet V, Takser L, Baccarelli AA. (2022). Associations of childhood and maternal metal exposure with children’s gut microbiomes in a Canadian gestation cohort. Environmental Health Perspectives 130 (1): 017007. Read ; Code
  5. Gao F, Zhang W, Baccarelli AA, Shen Y*. (2022). Predicting Chemical Ecotoxicity by Learning Latent Space Chemical Representations. Environment International 163, 107224. Read ; Code
  6. Shen Y, Zhao E, Zhang W, Baccarelli AA, Gao F. (2022) Predicting pesticide dissipation half-life intervals in plants with machine learning models. Journal of Hazardous Materials 436, 129177. Read ; Code
  7. Laue HE*1, Shen Y1, Bloomquist TR, Wu H, Brennan, KJM, Raphael C, Wilkie E, Gillet V, Desautels A, Abdelouahab N, Bellenger JP, Burris HH, Coull BA, Weisskopf MG, Zhang W, Takser L, Baccarelli AA. (2022). In utero exposure to caffeine and acetaminophen, the gut microbiome, and neurodevelopmental outcomes, a prospective birth cohort study. International Journal of Environmental Research and Public Health 19(15), 9357. 1co-first Read ; Code
  8. Gao F1, Shen Y1, Sallach JB, Li H, Zhang W, Li Y, Liu C. (2022). Predicting crop root concentration factors of organic contaminants with machine learning models. Journal of Hazardous Materials 424,127437. 1co-first Read ; Code

  9. Campana AM*, Laue HE, Shen Y, Shrubsole MJ, Baccarelli AA. (2022). Assessing the role of the gut microbiome at the interface between environmental chemical exposures and human health: Current knowledge and challenges. Environmental Pollution 315,120380. Read

    2021

  10. Shen Y, Hamm J, Gao F, Ryser ET, Zhang W*. (2021). Assessing consumer buy and pay preferences for labeled food products with statistical and machine learning methods. Journal of Food Protection 84.9 (2021): 1560-1566. Read ; Code
  11. Shen Y, Ryser ET, Li H, Zhang W*. (2021). Bacterial community assembly and antibiotic resistance genes in the lettuce-soil system upon antibiotic exposure. Science of the Total Environment 778, 146255. Read ; Code
  12. Shen Y, Li H, Ryser ET, Zhang W*. (2021). Comparing root concentration factors of antibiotics for lettuce (Lactuca sativa) measured in rhizosphere and bulk soils. Chemosphere 262, 127677. Read ; Code

  13. Gao F, Shen Y, Sallach JB, Li H, Liu C, Li Y. (2021). Direct prediction of bioaccumulation of organic contaminants in plant roots from soils with machine learning models based on molecular structures. Environmental Science & Technology 55(24):16358-16368. Read ; Code

    2019

  14. Shen Y, Stedtfeld RD, Guo X, Bhalsod GD, Jeon S, Tiedje JM, Li H, Zhang W*. (2019). Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce. Environment International 131, 105031. Read ; Code

    Publication summary:

Microbiome: 1) Shen et al., 2022. Environmental Health Perspectives; 2) Laue and Shen et al., 2022. International Journal of Environmental Research and Public Health; 3) Campana et al., 2022. Environmental Pollution. 4) Shen et al., 2021. Science of the Total Environment; 5) Shen et al., 2021. Chemosphere. 6) Shen et al., 2019. Environment International. 7) Chen et al., 2023. Environmental Microbiology.

Precision computational environmental health: 1) Shen et al., 2023. Environmental Science & Technology. 2) Shen et al., 2022. Journal of Hazardous Materials; 3) Gao et al., 2022. Environment International (corresponding author); 4) Gao and Shen et al., 2022. Journal of Hazardous Materials; 5) Gao et al., 2021. Environmental Science & Technology; 6) Shen et al., 2021. Journal of Food Protection.

Updated 06/11/2023