Yike Shen, Ph.D.

Yike Shen, Ph.D.

Assistant Professor

Publications

In Utero Exposure to Caffeine and Acetaminophen, the Gut Microbiome, and Neurodevelopmental Outcomes: A Prospective Birth Cohort Study

Published in International Journal of Environmental Research and Public Health, 2022

Code, https://github.com/YikeShen/Laue-and-Shen-et-al_2022_IJERPH

Recommended citation: Laue HE*#, Shen Y#, Bloomquist TR, Wu H, Brennan, KJM, Raphael C, Wilkie E, Gillet V, Desautels A, Abdelouahab N, Bellenger JP, Burris HH, Coull BA, Weisskopf MG, Zhang W, Takser L, Baccarelli AA. (2022). In utero exposure to caffeine and acetaminophen, the gut microbiome, and neurodevelopmental outcomes, a prospective birth cohort study. International Journal of Environmental Research and Public Health 19(15), 9357.#equal contribution https://doi.org/10.3390/ijerph19159357

Predicting crop root concentration factors of organic contaminants with machine learning models

Published in Journal of Hazardous Materials, 2022

Code, https://github.com/YikeShen/Gao-and-Shen-et-al_Journal-of-Hazardous-Materials_2022

Recommended citation: Gao F#, Shen Y#, Sallach JB, Li H, Zhang W, Li Y*, Liu C*. 2022. Predicting crop root concentration factors of organic contaminants with machine learning models. Journal of Hazardous Materials. 424, 127437. #Equal Contribution https://www.sciencedirect.com/science/article/pii/S0304389421024055

Associations of childhood and perinatal blood metals with children’s gut microbiomes in a Canadian gestation cohort

Published in Environmental Health Perspectives, 2022

Code, https://github.com/YikeShen/Shen-et-al.-2022_Environmental-Health-Perspectives.

Recommended citation: Shen Y*, Laue HE, Shrubsole MJ, Wu H, Bloomquist TR, Larouche A, Zhao K, Gao F, Boivin A, Prada D, Hunting DJ. Gillet V, Takser L, Baccarelli AA. (2022). Associations of childhood and perinatal blood metals with children’s gut microbiomes in a Canadian gestation cohort. Environmental Health Perspectives. 130(1). https://ehp.niehs.nih.gov/doi/full/10.1289/EHP9674

Direct prediction of bioaccumulation of organic contaminants in plant roots from soils with machine learning models based on molecular structures

Published in Environmental Science & Technology, 2021

Code, https://github.com/FengGmsu/RCF.

Recommended citation: Gao F, Shen Y, Sallach JB, Li H, Liu C*, Li Y*. (2021). Direct prediction of bioaccumulation of organic contaminants in plant roots from soils with machine learning models based on molecular structures. Environmental Science & Technology. 55, 16358-26368 https://pubs.acs.org/doi/full/10.1021/acs.est.1c02376

Bacterial community assembly and antibiotic resistance genes in the lettuce-soil system upon antibiotic exposure

Published in Science of The Total Environment, 2021

Code, https://github.com/YikeShen/Shen-et-al.-2021_Science-of-the-Total-Environment.

Recommended citation: Shen Y, Ryser ET, Li H, Zhang W*. (2021). Bacterial community assembly and antibiotic resistance genes in the lettuce-soil system upon antibiotic exposure. Science of The Total Environment, 778, 146255. https://www.sciencedirect.com/science/article/pii/S0048969721013231

Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce

Published in Environment International, 2019

Code, https://github.com/YikeShen/Shen-et-al.-2019_Environment-International

Recommended citation: Shen Y, Stedtfeld RD, Guo X, Bhalsod GD, Jeon S, Tiedje JM, Li H, Zhang W* (2019). Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface-and overhead-irrigated greenhouse lettuce. Environment international, 131, 105031. https://www.sciencedirect.com/science/article/pii/S016041201931270X