Blog posts

2021

Metatranscriptome rRNA depletion and Library Prep Test

less than 1 minute read

Published: December 06, 2021

This is the Metatranscriptome rRNA depletion and Library Prep Test
Author: Yike Shen
Test Link: https://github.com/YikeShen/metatranscriptome_rRNALibPrep_test
12/06/2021
- Workflow and results: Metatranscriptome_rRNAdep_Lib_2021.ipynb
- QC_Reports: multiqc reports and summary excel

Amazon Web Service RONIN Cloud Computing Tutorial

less than 1 minute read

Published: June 04, 2021

This is the AWS RONIN tutorials for Baccarelli Lab at Columbia University
Author: Yike Shen
Tutorial Link: https://github.com/YikeShen/BaccarelliLab_AWSRONIN_tutorials
06/04/2021
- Confidential video tutorials to Baccarelli Lab available at lab shared drive under AWS RONIN tutorials
- Tutorial_1: RONIN Machine and cluster configuration and navigation
- Tutorial_2: AWS CLI and file transfer.
- Tutorial_3: Example for small amplicon sequencing data processing using python and unix command in Linux system.
- Tutorial_4: Example for large shotgun metagenome sequencing data processing using python and unix command in Linux system.